ALS-ST.NYGENOME.ORG

An interactive data exploration portal for the spatiotemporal transcriptome atlas of the ALS spinal cord

 

Array view

Spatial gene expression on mouse arrays
Mouse arrays
Spatial gene expression on human arrays
Human arrays

Spinal cord view

Spatial gene expression on mouse spinal cord
Mouse spinal cord
Spatial colocalized gene expression on mouse spinal cord
Colocalization on mouse spinal cord
Spatial gene expression on human spinal cord
Human spinal cord

Coefficient view

Expression coefficients of mouse anatomical annotation regions
Expression coefficients
Bayes factors quantifying gene expression differences
Bayes factors

Expression trajectory view

Expression trajectories in mouse spinal cord
Expression trajectories

A user guide is available here

 

Acknowledgements

New York Genome Center Flatiron Institute Simons Foundation SciLifeLab Columbia University Medical Center

Target ALS The ALS Association The Tow Foundation Knut and Alice Wallenberg Foundation

How to cite

Spatiotemporal Dynamics of Molecular Pathology in Amyotrophic Lateral Sclerosis
Silas Maniatis, Tarmo Aijo, Sanja Vickovic, Catherine Braine, Kristy Kang, Annelie Mollbrink, Delphine Fagegaltier, Zaneta Andrusivova, Sami Saarenpaa, Gonzalo Saiz-Castro, Miguel Cuevas, Aaron Watters, Joakim Lundeberg, Richard Bonneau, Hemali Phatnani
doi: https://doi.org/10.1126/science.aav9776

Downloads

Count Matrices
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Annotations
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Images
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Metadata
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Contact

To report a bug or request a feature, please send an email to .

Known issues